AtaGenix Laboratories

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Anti-PTM

AtaGenix develops antibodies specific for post-translational modifications (PTMs) — phosphorylation, methylation, acetylation, glycosylation, succinylation, and lactylation. These antibodies distinguish the modified form of a protein from the unmodified form, enabling precise detection and quantification of PTM events in signaling, epigenetics, and disease research.

6+

PTM Types Supported

2-Round

Affinity Purification

Free

Antigen Design

pAb / mAb

Both Available

The key challenge in PTM antibody development is specificity: the antibody must recognize the modified residue without cross-reacting with the unmodified form. AtaGenix solves this through two-round affinity purification — first positive selection with the modified peptide, then negative depletion against the unmodified peptide. This ensures only modification-specific antibodies are delivered.

Supported Modification Types

Modification Description Research Relevance
Phosphorylation pSer, pThr, pTyr at specific residues Signal transduction, kinase activity, cancer biology
Methylation Mono/di/tri-methylation on Lys or Arg Epigenetics, histone regulation, aging, cancer
Acetylation Lys acetylation by acetyltransferases Gene expression, histone regulation, metabolism
Glycosylation N-linked, O-linked, C-linked sugar moieties Protein folding, cell adhesion, immune function
Succinylation Lys succinylation (discovered 2010) Metabolic regulation, mitochondrial function
Lactylation Histone Lys lactylation (discovered 2019) Warburg effect, tumor immunity, cell reprogramming

Free Antigen Design

Just provide the target protein sequence and modification site. We design the optimal modified and unmodified peptide pair, select linker positions to preserve epitope accessibility, and handle peptide synthesis and carrier conjugation — all included in the project.

Two-Round Affinity Purification

First round: positive selection using the modified peptide column to capture PTM-binding antibodies. Second round: negative depletion using the unmodified peptide column to remove cross-reactive antibodies. The result: antibodies that specifically recognize only the modified form.

In-House Peptide Synthesis

Modified peptide synthesis (phospho, methyl, acetyl, crotonyl, succinyl, lactyl) and carrier conjugation (KLH, BSA) are handled entirely in-house. No external peptide vendor coordination needed — faster turnaround and tighter QC control over the entire process.

Contact Us

AtaGenix's PTM antibody service covers the complete pipeline: antigen design (free), modified + unmodified peptide synthesis, carrier protein conjugation (KLH/BSA), animal immunization, and two-round affinity purification to ensure modification-specific recognition. Both polyclonal (6–8 weeks, 3–5 mg purified antibody) and monoclonal (2–3 months, 1–3 clones + 2 mg purified antibody) options are available. Supported modifications: phosphorylation, methylation, acetylation, glycosylation, succinylation, and lactylation.

PTM Antibody Development Workflow

A 5-stage pipeline from antigen design to modification-specific antibody. The two-round purification at Step 05 is the critical differentiator that ensures PTM specificity.

01

Antigen Design

Modification site analysis
Modified peptide design
Unmodified control peptide

02

Peptide & Conjugation

Modified peptide synthesis
Unmodified peptide synthesis
KLH / BSA conjugation

03

Immunization

Rabbit (pAb) or rat/mouse (mAb)
Modified peptide-KLH immunogen
Titer monitoring by ELISA

04

Screening (mAb) / Bleed (pAb)

mAb: fusion, subclone, ELISA
pAb: final bleed + serum
Modified vs unmodified ELISA

05

Two-Round Purification

Round 1: modified peptide column (+)
Round 2: unmodified peptide column (−)
QC: WB, ELISA, dot blot

Service Options

Option Client Provides Timeline Deliverables
Polyclonal (pAb) Protein sequence + modification site 6–8 weeks Peptides + serum sample + 3–5 mg purified Ab + report
Monoclonal (mAb) Protein sequence + modification site 2–3 months Peptides + 1–3 clones + 2 mg purified Ab + report

Case Highlight — FGFR3 phospho-Y724 polyclonal antibody: modified peptide immunization in rabbit, two-round affinity purification, validated by Western Blot showing clear discrimination between pervanadate-treated (phospho+) and untreated (phospho−) cell lysates.

Related services: Peptide Synthesis for standalone modified peptides. Polyclonal Antibody for standard (non-PTM) protein targets. Anti-Small Molecule for hapten antibodies. Rapid Hybridoma for standard mouse mAb.

Frequently Asked Questions

What information do I need to provide?

Just the target protein sequence and the specific modification site (e.g., "Human Histone H3 trimethyl-K27" or "FGFR3 phospho-Y724"). AtaGenix designs the optimal modified and unmodified peptide sequences, selects the conjugation strategy, and handles everything from synthesis through antibody delivery — antigen design is free.

How does two-round purification ensure PTM specificity?

After immunization, the serum contains antibodies against both the modified epitope and the carrier protein/backbone sequence. Two-round purification first captures antibodies that bind the modified peptide (positive selection), then removes any that also bind the unmodified peptide (negative depletion). Only antibodies that recognize the modification itself pass through both rounds. This is verified by comparative ELISA and/or dot blot against both peptide forms.

Should I choose polyclonal or monoclonal for PTM detection?

Polyclonal (6–8 weeks, 3–5 mg) is faster and often sufficient for WB, IHC, and IF applications where high signal is more important than absolute reproducibility. Monoclonal (2–3 months, 1–3 clones) provides batch-to-batch consistency, defined epitope, and unlimited supply from the cell line — preferred for quantitative assays, diagnostics, and long-term research programs requiring reproducible reagents.

Can you develop antibodies against newer modifications like lactylation?

Yes. Our peptide synthesis platform supports lactylation (Kla), succinylation (Ksucc), crotonylation (Kcr), and other emerging modifications in addition to the classic phospho/methyl/acetyl set. The two-round purification strategy works identically for any modification type — the principle (positive selection with modified peptide, negative depletion with unmodified peptide) is universal.

PTM antibody specificity is target- and modification-dependent. Two-round purification significantly reduces but may not completely eliminate cross-reactivity in all cases. Validation data (WB, ELISA) included in technical report. Quote-based pricing.

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